Noninvasive transcranial magnetic stimulation (TMS) of the brain using a focal eight-shaped coil with 100% stimulation output was performed in eleven healthy subjects to find out if excitatory and inhibitory responses in the small hand muscles could be dissociated. Motor evoked potentials (MEP) as well as silent periods (SP) were recorded from the right abductor pollicis brevis (APB), and first dorsal interosseus (FDI) muscles at rest and during weak voluntary contraction. Mapping of the cortical representation area was performed over different scalp locations on the left hemisphere. The cortical representation maps for ABP and FDI recorded during contraction covered much larger area and were more elongated in the anterior-posterior than in the medial-lateral direction compared to maps obtained during relaxation. The distribution maps for SPs covered larger scalp areas compared to the maps of MEPs obtained during voluntary contraction. Also during voluntary contraction the locations for evoking the longest SPs were not identical to locations for evoking the peak MEP amplitudes; the longest SPs were observed during stimulation of more medial and frontal locations compared to peak MEPs. Interestingly, stimulation of some locations resulted in the appearance of an isolated MEP without the following SP and in other locations an isolated SP was recorded. The areas for evoking isolated MEPs were in the center, whereas the areas for isolated SPs were located in the periphery of the map. Features such as exclusive locations for MEPs and SPs, and different locations for peak MEP amplitudes and longest SPs, suggest dissociation of the excitatory and inhibitory cortical processes evoked by transcranial magnetic stimulation during voluntary contraction.