Locus | Allele | Allele frequency | p value for allele* | Genotype | Genotype frequency | p value for genotype† | ||
---|---|---|---|---|---|---|---|---|
Control (n = 936) | AD (n = 780) | Control (n = 468) | AD (n = 390) | |||||
*Fisher’s exact test and †unbiased estimate of exact p value. The Bonferroni corrected p values for SNP 1 and SNP 7 are given in parenthesis. | ||||||||
SNP 1 | C | 0.70 | 0.64 | 0.01 (0.14) | CC | 0.48 | 0.41 | 0.01 (0.14) |
T | 0.30 | 0.36 | CT | 0.45 | 0.46 | |||
TT | 0.07 | 0.13 | ||||||
SNP 2 | C | 0.12 | 0.14 | 0.36 | CC | 0.03 | 0.03 | 0.54 |
T | 0.88 | 0.86 | CT | 0.19 | 0.22 | |||
TT | 0.78 | 0.75 | ||||||
SNP 3 | C | 0.52 | 0.53 | 0.92 | CC | 0.28 | 0.28 | 0.98 |
T | 0.48 | 0.47 | CT | 0.49 | 0.49 | |||
TT | 0.23 | 0.23 | ||||||
SNP 4 | C | 0.41 | 0.39 | 0.50 | CC | 0.18 | 0.17 | 0.73 |
T | 0.59 | 0.61 | CT | 0.46 | 0.44 | |||
TT | 0.36 | 0.39 | ||||||
SNP 5 | C | 0.68 | 0.68 | 1.00 | CC | 0.46 | 0.47 | 0.62 |
T | 0.32 | 0.32 | CT | 0.44 | 0.41 | |||
TT | 0.10 | 0.12 | ||||||
SNP 6 | C | 0.78 | 0.78 | 1.00 | CC | 0.59 | 0.61 | 0.62 |
T | 0.22 | 0.22 | CT | 0.37 | 0.34 | |||
TT | 0.04 | 0.05 | ||||||
SNP 7 | G | 0.19 | 0.14 | 0.01 (0.14) | GG | 0.03 | 0.01 | 0.01 (0.14) |
A | 0.81 | 0.86 | GA | 0.31 | 0.25 | |||
AA | 0.66 | 0.74 |