Table 2

Clinically established and ACMG reportable variants in ALS-associated genes: 22 changes in 21 individuals

SampleGeneGenomic variantProtein change (HGVSp canonical)Population frequency (gnomAD)Classification
SHF-094ALS2chr2:g.202625839G>Ap.Thr293Ile1.00E−05Pathogenic
SHF-014C9orf72NAPathogenic
SHF-017C9orf72NAPathogenic
SHF-018C9orf72NAPathogenic
SHF-043C9orf72NAPathogenic
SHF-081C9orf72NAPathogenic
SHF-083C9orf72NAPathogenic
SHF-103C9orf72NAPathogenic
SHF-138C9orf72NAPathogenic
SHF-152C9orf72NAPathogenic
SHF-162C9orf72NAPathogenic
SHF-021ATXN2NALikely pathogenic
SHF-065FIG4chr6:g.110107620T>TAp.Thr689AsnfsTer12NoneLikely pathogenic
SHF-080FIG4chr6:g.110036336T>Cp.Ile41Thr0.00102Pathogenic
SHF-094NEFHchr22:g.29885959C>Tp.Pro777Leu3.00E−05Pathogenic
SHF-006SOD1chr21:g.33039672T>Cp.Ile114Thr5.00E−05Pathogenic
SHF-039SOD1chr21:g.33039672T>Cp.Ile114Thr5.00E−05Pathogenic
SHF-078SOD1chr21:g.33039672T>Cp.Ile114Thr5.00E−05Pathogenic
SHF-082SOD1chr21:g.33040846C>Ap.Asn140Lys0Pathogenic
SHF-007SOD1chr21:g.33038821G>Tp.Asp77TyrNonePathogenic
SHF-085SPG11chr15:g.44856883G>Ap.Ala2338Val1.00E−05Likely pathogenic
SHF-084TBK1chr12:g.64891000TGAA>Tp.Glu643del1.00E−05Likely pathogenic
  • ACMG, American College of Medical Genetics and Genomics; ALS, amyotrophic lateral sclerosis; NA, not available.